Table of Contents
URMITE lab - Marseille / La Timone
Learnings - Introduction to Bioinformatics
Place
Faculty of Medicine, Marseille. Main building, red wing, 1st floor, room 11.
Last planning (session 2)
Next Bioinformatics Learnings : March 2015
- Tuesday, March 17. 9h-12h. Sequence Analysis / Retrieved sequences - Blast (⇐ me).
- Tuesday, March 17. 13h30-17h30. Primers and probes design (⇐ me)
- Wednesday, March 18. 9h-10h15. Sampling prep / Next Gen Sequencing (⇐ Catherine Robert)
- Wednesday, March 18. 10h15-12h15. 16S pyrosequencing & Metagenomic (⇐ Dr. Fabrice Armougom)
- Wednesday, March 18. 13h30h-17h30. TD Metagenomic / 16S pyrosequencing & network visualization (⇐ Dr. Fabrice Armougom)
- Thursday, March 19. 9h-12h. Multiple Seq. Alignment & Phylogeny (⇐ Dr. Khalid Elkarkouri)
- Thursday, March 19. 13h30-17h30. TD Multiple Seq. Alignment & Phylogeny (⇐ Dr. Khalid Elkarkouri)
- Friday, March 20. 9h-12h. Assembly and mapping reads from NGS sequencing (⇐ me)
- Friday, March 20. 11h45-12h30. Evolutionary biology: concepts & applications (⇐ Pr. Levasseur)
- Friday, March 20. 13h30-17h30. Genomes annotation (⇐ Dr. Khalid Elkarkouri)
Previous planning (session 1)
Next Bioinformatics Learnings : February 2015
- Wednesday, February 18. 9h-12h. Sequence Analysis / Retrieved sequences - Blast (⇐ me).
- Wednesday, February 18. 13h30-17h30. Primers and probes design (⇐ me)
- Thursday, February 19. 9h-10h15. Sampling prep / Next Gen Sequencing (⇐ Catherine Robert)
- Thursday, February 19. 10h15-11h15. 16S pyrosequencing (⇐ Dr. Fabrice Armougom)
- Thursday, February 19. 11h15-12h15. Metagenomic (⇐ Dr. Fabrice Armougom)
- Thursday, February 19. 13h30h-15h30. TD Metagenomic (⇐ Dr. Fabrice Armougom)
- Thursday, February 19. 15h30-17h30. TD 16S pyrosequencing & network visualization (⇐ Dr. Fabrice Armougom)
- Friday, February 20. 9h-12h. Assembly and mapping reads from NGS sequencing (⇐ me)
- Friday, February 20. 11h45-12h30. Evolutionary biology: concepts & applications (⇐ Pr. Levasseur)
- Friday, February 20. 13h30-17h30. Genomes annotation (⇐ Dr. Khalid Elkarkouri)
- Monday, February 23. 9h-12h. Multiple Seq. Alignment & Phylogeny (⇐ Dr. Khalid Elkarkouri)
- Monday, February 23. 13h30-17h30. TD Multiple Seq. Alignment & Phylogeny (⇐ Dr. Khalid Elkarkouri)
Teachings
- Sequences_analysis.pdf (link disabled)
- Oligomers_design.pdf (link disabled)
- Genomes_assemblies_and_finishing.pdf (link disabled)
Exersices
- finishing_tuto.html (link disabled)
- cap3_tuto.html (link disabled)
- blast_URMITE_tuto.html (link disabled)