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teachings:tuto_16s_microbial_analysis [2020/02/07 16:59] olivierteachings:tuto_16s_microbial_analysis [2020/09/08 15:47] olivier
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 ==== 16S Microbial Analysis (with Galaxy) ==== ==== 16S Microbial Analysis (with Galaxy) ====
  
-This tutorial required:+__This tutorial required__:
  
-  * a computer (under Linux, Mac, Windows) with an internet connection +  * a computer (under Linux, Mac, Windows) **with** an internet connection 
- +   
-  * an access to a Galaxy website server (many are available freely) \\ \\ => See what is the Galaxy project: [[https://en.wikipedia.org/wiki/Galaxy_%28computational_biology%29|Wikipedia]] or [[https://usegalaxy.org/|Official website]] +  * To know what a fasta or fastq (fastaq = fq) file is 
- + <hidden Click here for fasta format description>  
-{{ :teachings:galaxy.png?400 |}} +//Data in text format used to store nucleic acid sequences (such as DNA sequences) or protein sequences; may contain multiple sequences. FASTA files often start with a header line that may contain comments or other information. The rest of the file contains sequence data. Each sequence starts with a ">" symbol followed by the name of the sequence. The rest of the line describes the sequence and the remaining lines contain the sequence itself.// \\Example : \\ \\ <nowiki>
- +
-  * Create an account on of these Galaxy server : \\ \\ https://usegalaxy.eu/login\\ https://nanopore.usegalaxy.eu/login\\   https://ecology.usegalaxy.eu/login \\ \\ google it for others servers ! +
- +
-  * To know what a fasta or fastq (fastaq = fq) file is : +
- +
-//Data in text format used to store nucleic acid sequences (such as DNA sequences) or protein sequences; may contain multiple sequences. FASTA files often start with a header line that may contain comments or other information. The rest of the file contains sequence data. Each sequence starts with a ">" symbol followed by the name of the sequence. The rest of the line describes the sequence and the remaining lines contain the sequence itself.// Example : \\ \\ <nowiki>+
 >human_T1 (UCSC April 2002 chr7:115977709: >human_T1 (UCSC April 2002 chr7:115977709:
 TTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGCTAAGGGCAGCC TTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGCTAAGGGCAGCC
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 </nowiki> </nowiki>
  
-  * Start this tutrorial : [[https://galaxyproject.github.io/training-material/topics/metagenomics/tutorials/mothur-miseq-sop-short/tutorial.html|here]]+</hidden> 
 +\\ 
 + 
 +  * an access to a Galaxy website server (many are available freely) \\ \\ => See what is the Galaxy project: [[https://en.wikipedia.org/wiki/Galaxy_%28computational_biology%29|Wikipedia]] or [[https://usegalaxy.org/|Official website]] 
 + 
 +{{ :teachings:galaxy.png?400 |}} 
 + 
 +  * Create an account on of these Galaxy server : \\ \\ https://usegalaxy.org.au/login \\ https://usegalaxy.eu/login\\ https://nanopore.usegalaxy.eu/login\\   https://ecology.usegalaxy.eu/login \\ * google it for others servers ! 
 + 
 + 
 + 
 +  => Start this tutorial : [[https://galaxyproject.github.io/training-material/topics/metagenomics/tutorials/mothur-miseq-sop-short/tutorial.html|here]]
  
teachings/tuto_16s_microbial_analysis.txt · Last modified: 2022/10/13 14:12 by olivier