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version [2020/01/13 14:45] – olivier | version [2020/06/22 10:27] – olivier | ||
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Ballgown | | | | Ballgown | | | | ||
SciLab | 5.5.2 | | | SciLab | 5.5.2 | | | ||
- | + | ||
+ | == Phylogeny == | ||
+ | Beast | 1.10.4 | | | ||
== Trimmers / Reads cleaners == | == Trimmers / Reads cleaners == | ||
Bbmap | ? | | | Bbmap | ? | | | ||
Cutadapt | 1.11 | | | Cutadapt | 1.11 | | | ||
FastP | 0.19.4 | | | FastP | 0.19.4 | | | ||
+ | Fastq_screen | 0.8.0 | | | ||
ParDRe | 2.2.5 | | | ParDRe | 2.2.5 | | | ||
Trimmomatic | 0.36 | | | Trimmomatic | 0.36 | | | ||
Line 79: | Line 83: | ||
ABYSS | 2.0.2 | | | ABYSS | 2.0.2 | | | ||
AlignGraph | ? | | | AlignGraph | ? | | | ||
- | Canu | | + | Canu | |
Falcon-integrate| Nov.2016 | | | Falcon-integrate| Nov.2016 | | | ||
Lordec | 0.6 | | | Lordec | 0.6 | | |