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teachings:tuto_16s_microbial_analysis [2025/01/30 12:10] – external edit 127.0.0.1teachings:tuto_16s_microbial_analysis [2025/02/10 10:20] (current) olivier
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 __cons__: some limitations and slow (or super slow) when running big computations __cons__: some limitations and slow (or super slow) when running big computations
  
- **2)** Use our local Galaxy server (IRCAN institute, in Pasteur tower)+ **2)** Use our local Galaxy server (IRCAN institute, in Pasteur tower) //- Only for tutorial with Illumina data !//
  
  http://galaxy-metag.ircan.org/  http://galaxy-metag.ircan.org/
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 __cons__: should to be faster than previous servers, but depending the number of students connected at the same time ! __cons__: should to be faster than previous servers, but depending the number of students connected at the same time !
  
- **3)** Install Galaxy on your own computer+ **3)** Install Galaxy on your own computer -// Only for tutorial with Illumina data !//
  
 - install "docker" tool [[https://www.docker.com/get-started|here]]\\ - install "docker" tool [[https://www.docker.com/get-started|here]]\\
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   * Create a personal account into Galaxy (top-right menu)    * Create a personal account into Galaxy (top-right menu) 
  
-  * Start this tutorial : [[http://www.bioinfomed.fr/__Teachings/tuto_Galaxy_metaG/index.html|Here]] //([[https://galaxyproject.github.io/training-material/topics/metagenomics/tutorials/mothur-miseq-sop-short/tutorial.html|alternative link]])//+  * Start tutorial 
 + 
 +- 16S with Illumina data : 
 +[[http://www.bioinfomed.fr/__Teachings/tuto_Galaxy_metaG/index.html|Here]] //([[https://galaxyproject.github.io/training-material/topics/metagenomics/tutorials/mothur-miseq-sop-short/tutorial.html|alternative link]])// 
 + 
 +- 16S with Nanopore data: 
 +[[https://training.galaxyproject.org/training-material/topics/microbiome/tutorials/nanopore-16S-metagenomics/tutorial.html|here]]
  
teachings/tuto_16s_microbial_analysis.txt · Last modified: 2025/02/10 10:20 by olivier