https://bioinfomed.fr/ 2026-07-07T18:27:28+00:00 https://bioinfomed.fr/ https://bioinfomed.fr/lib/exe/fetch.php?media=wiki:dokuwiki.svg text/html 2026-07-02T07:42:01+00:00 olivier (olivier@undisclosed.example.com) https://bioinfomed.fr/doku.php?id=teachings:ngs_assemblies&rev=1782978121&do=diff Tutorial: NGS assemblies Aims This tutorial will address several assembly issues: quality control, assembly, mapping and scaffolding. The assembly can be done with Velvet or Minia. Requirement * You need to use a virtual machine (VM). This VM is downloadable text/html 2026-06-30T07:22:53+00:00 olivier (olivier@undisclosed.example.com) https://bioinfomed.fr/doku.php?id=contacts:croce:full_cv&rev=1782804173&do=diff Olivier Croce, PhD " CNRS Research Engineer, Senior Class (IRHC) Head of the Bioinformatics & IT Service IRCAN — Institute for Research on Cancer and Aging of Nice INSERM U1081 · CNRS UMR 7284 · Université Côte d’Azur" olivier.croce@cnrs.fr olivier.croce@univ-cotedazur.fr bioinfomed.fr bioinfo.ircan.org ORCID Profile text/html 2026-06-30T07:20:52+00:00 olivier (olivier@undisclosed.example.com) https://bioinfomed.fr/doku.php?id=contacts:croce:croce2&rev=1782804052&do=diff Olivier Croce, PhD " CNRS Research Engineer, Senior Class (IRHC) Head of the Bioinformatics & IT Service IRCAN — Institute for Research on Cancer and Aging of Nice INSERM U1081 · CNRS UMR 7284 · Université Côte d’Azur" olivier.croce@cnrs.fr olivier.croce@univ-cotedazur.fr bioinfomed.fr bioinfo.ircan.org ORCID Profile text/html 2026-06-30T07:19:00+00:00 olivier (olivier@undisclosed.example.com) https://bioinfomed.fr/doku.php?id=contacts:croce:publications&rev=1782803940&do=diff Publications (in peer-reviewed journals) ORCID: 0000-0002-7342-3157 * [69] 2026 ; Kellermann G, Croce O, Mograbi B, Hofman P, Brest P. Comprehensive mapping of identical sequences across human proteins emphasizes the widespread issue of shared epitopes in self-antigens. text/html 2026-06-22T07:35:46+00:00 olivier (olivier@undisclosed.example.com) https://bioinfomed.fr/doku.php?id=tools:tools&rev=1782113746&do=diff Some of the tools I developed a long time ago * Mc2plan (authorized access required) Radiotherapy planification assistant for contact therapy, using pre-computed Monte Carlo simulation. Author: Olivier Croce Programming Language: Penelope code (Fortran / C++) - PHP(gdgraph)/JavaScript/Python text/html 2026-06-05T07:07:33+00:00 olivier (olivier@undisclosed.example.com) https://bioinfomed.fr/doku.php?id=ircan&rev=1780643253&do=diff ---------- => IRCAN - IT & bioinfo service 8-) : (Partial) moving to a next website ⇒ <https://bioinfo.ircan.org> ---------- 2022 2021 2018 [ ] 2017 [ ] 2016 * How to access to the ircan's server * How to transfer server's files from/to an external server * How to access to Ingenuity Pathway Analysis (IPA) * List of tools installed on the server * How to .. cytometry ... * How to use the cloud system of IRCAN ? (by Amandine) * Tutorial : RNA-Seq pipeline - exam… text/html 2026-06-04T14:45:43+00:00 olivier (olivier@undisclosed.example.com) https://bioinfomed.fr/doku.php?id=start&rev=1780584343&do=diff ---------- IRCAN - IT & bioinfo service 8-) : (Partial) moving to a next website ⇒ <https://bioinfo.ircan.org> ---------- Olivier Croce - Research Engineer (IRHC) – CNRS " Institute for Research on Cancer and Aging of Nice (IRCAN) INSERM U1081 - CNRS UMR 7284 - UNS text/html 2026-06-04T12:22:55+00:00 olivier (olivier@undisclosed.example.com) https://bioinfomed.fr/doku.php?id=contacts:croce:cv_print&rev=1780575775&do=diff Olivier Croce, PhD CNRS Research Engineer, Senior Class (IRHC) Head of the Bioinformatics & IT Service IRCAN — Institute for Research on Cancer and Aging of Nice INSERM U1081 · CNRS UMR 7284 · Université Côte d’Azur olivier.croce@cnrs.fr olivier.croce@univ-cotedazur.fr bioinfomed.fr bioinfo.ircan.org ORCID: 0000-0002-7342-3157 Profile text/html 2026-03-02T09:40:03+00:00 olivier (olivier@undisclosed.example.com) https://bioinfomed.fr/doku.php?image=teachings%3Apython_en.pdf&ns=teachings&rev=1772444403&tab_details=history&media_do=diff&do=media <img src="https://bioinfomed.fr/lib/images/fileicons/svg/pdf.svg" alt="python_en.pdf" loading="lazy" width="500" height="500" /> text/html 2026-01-22T11:01:13+00:00 olivier (olivier@undisclosed.example.com) https://bioinfomed.fr/doku.php?image=teachings%3Aintro_metag.pdf&ns=teachings&rev=1769079673&tab_details=history&media_do=diff&do=media <img src="https://bioinfomed.fr/lib/images/fileicons/svg/pdf.svg" alt="intro_metag.pdf" loading="lazy" width="500" height="500" /> text/html 2026-01-22T11:01:00+00:00 olivier (olivier@undisclosed.example.com) https://bioinfomed.fr/doku.php?image=teachings%3Angs_and_genomes_assemblies.pdf&ns=teachings&rev=1769079660&tab_details=history&media_do=diff&do=media <img src="https://bioinfomed.fr/lib/images/fileicons/svg/pdf.svg" alt="ngs_and_genomes_assemblies.pdf" loading="lazy" width="500" height="500" /> text/html 2025-10-27T17:03:40+00:00 olivier (olivier@undisclosed.example.com) https://bioinfomed.fr/doku.php?image=teachings%3Anihms-2063750.pdf&ns=teachings&rev=1761584620&tab_details=history&media_do=diff&do=media <img src="https://bioinfomed.fr/lib/images/fileicons/svg/pdf.svg" alt="nihms-2063750.pdf" loading="lazy" width="500" height="500" /> text/html 2023-11-06T15:27:19+00:00 olivier (olivier@undisclosed.example.com) https://bioinfomed.fr/doku.php?image=teachings%3Afmicb-07-00459.pdf&ns=teachings&rev=1699284439&tab_details=history&media_do=diff&do=media <img src="https://bioinfomed.fr/lib/images/fileicons/svg/pdf.svg" alt="fmicb-07-00459.pdf" loading="lazy" width="500" height="500" />