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URMITE lab - Marseille / La Timone

Learnings - Introduction to Bioinformatics

Place

Click to enlarge Faculty of Medicine, Marseille. Main building, red wing, 1st floor, room 11.

Last planning (session 2)

Next Bioinformatics Learnings : March 2015

  • Tuesday, March 17. 9h-12h. Sequence Analysis / Retrieved sequences - Blast (⇐ me).
  • Tuesday, March 17. 13h30-17h30. Primers and probes design (⇐ me)
  • Wednesday, March 18. 9h-10h15. Sampling prep / Next Gen Sequencing (⇐ Catherine Robert)
  • Wednesday, March 18. 10h15-12h15. 16S pyrosequencing & Metagenomic (⇐ Dr. Fabrice Armougom)
  • Wednesday, March 18. 13h30h-17h30. TD Metagenomic / 16S pyrosequencing & network visualization (⇐ Dr. Fabrice Armougom)
  • Thursday, March 19. 9h-12h. Multiple Seq. Alignment & Phylogeny (⇐ Dr. Khalid Elkarkouri)
  • Thursday, March 19. 13h30-17h30. TD Multiple Seq. Alignment & Phylogeny (⇐ Dr. Khalid Elkarkouri)
  • Friday, March 20. 9h-12h. Assembly and mapping reads from NGS sequencing (⇐ me)
  • Friday, March 20. 11h45-12h30. Evolutionary biology: concepts & applications (⇐ Pr. Levasseur)
  • Friday, March 20. 13h30-17h30. Genomes annotation (⇐ Dr. Khalid Elkarkouri)

Previous planning (session 1)

Next Bioinformatics Learnings : February 2015

  • Wednesday, February 18. 9h-12h. Sequence Analysis / Retrieved sequences - Blast (⇐ me).
  • Wednesday, February 18. 13h30-17h30. Primers and probes design (⇐ me)
  • Thursday, February 19. 9h-10h15. Sampling prep / Next Gen Sequencing (⇐ Catherine Robert)
  • Thursday, February 19. 10h15-11h15. 16S pyrosequencing (⇐ Dr. Fabrice Armougom)
  • Thursday, February 19. 11h15-12h15. Metagenomic (⇐ Dr. Fabrice Armougom)
  • Thursday, February 19. 13h30h-15h30. TD Metagenomic (⇐ Dr. Fabrice Armougom)
  • Thursday, February 19. 15h30-17h30. TD 16S pyrosequencing & network visualization (⇐ Dr. Fabrice Armougom)
  • Friday, February 20. 9h-12h. Assembly and mapping reads from NGS sequencing (⇐ me)
  • Friday, February 20. 11h45-12h30. Evolutionary biology: concepts & applications (⇐ Pr. Levasseur)
  • Friday, February 20. 13h30-17h30. Genomes annotation (⇐ Dr. Khalid Elkarkouri)
  • Monday, February 23. 9h-12h. Multiple Seq. Alignment & Phylogeny (⇐ Dr. Khalid Elkarkouri)
  • Monday, February 23. 13h30-17h30. TD Multiple Seq. Alignment & Phylogeny (⇐ Dr. Khalid Elkarkouri)

Teachings

  • Sequences_analysis.pdf (link disabled)
  • Oligomers_design.pdf (link disabled)
  • Genomes_assemblies_and_finishing.pdf (link disabled)

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Exersices

  • finishing_tuto.html (link disabled)
  • cap3_tuto.html (link disabled)
  • blast_URMITE_tuto.html (link disabled)

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teachings/teachings_timone.txt · Last modified: 2025/01/30 12:10 by 127.0.0.1

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