bioinfomed

M1 & M2 - BBC (Bioinformatique et Biologie Computationnelle) + others
UE Omiques, UE Atelier Omiques

Basis in Metagenomics and Barcoding. Genomes assembling

Biology knowledge, Next Generation Sequencing basis. A computer is required for the tutorials, so bring your own laptop. You can also bring your laptop for the courses session to follow the online lectures or to see some websites mentioned during the teachings.

• M2 BBC - Monday November 6th | 9:00 - 13:00 (4 hrs) | “ECUE Biologie computationelle des données omiques ”
  
  
  • Where: Valrose campus, room 315 (Sc. nat. building)
    
    
  • Tutorial: NGS assemblies by command lines: quality tests, trimming, assembling with Minia & Velvet and orfing

• M1 BBC + générique - Tuesday November 7h | 15:15 - 17:15 (2 hrs) | UE15 omiques
  
  
  • Where : Valrose campus, room Risso, building “TP Sciences Naturelles”
    
    
  • Presentation of the bioinformatics service of IRCAN
  • Courses: Introduction to MetaGenomics
    

• M1 - Thursday November 23th | 13:00 - 16:00 (3 hrs) | “Atelier omnique”
  
  
  • Where: Valrose campus, room 315, building “TP Sciences Naturelles”
    
    
  • Tutorial: Metagenomics, identification of species using 16S barcoding on Galaxy

• NGS and genomes assemblies
• Tutorial: NGS assemblies

• Introduction to MetaGenomics

• Tutorial : Metagenomics : identification of species using 16S barcoding

Other:

• Sequences searching
• Oligomers design